reports

2024

1. sgBERT: protein structure and sequence embeddings via attention

   Chunzhuo Zhang

   2024

   Two BERT-like models for protein structure and protein structure with sequence. M.Sc. thesis project, Wageningen University & Research.

   Bib PDF Code

   @misc{zhang2024sgbert,
     title = {sgBERT: protein structure and sequence embeddings via attention},
     author = {Zhang, Chunzhuo},
     year = {2024},
     note = {Two BERT-like models for protein structure and protein structure with sequence. M.Sc. thesis project, Wageningen University \& Research.},
   }

2. SEGIN: equivariant graph neural networks for protein–protein interface false-positive prediction

   Chunzhuo Zhang

   2024

   Alanine-scanning benchmark for different models, extends DeepRank-GNN with harmonic-function equivariance. M.Sc. thesis project, Wageningen University & Research.

   Bib PDF Code

   @misc{zhang2024segin,
     title = {SEGIN: equivariant graph neural networks for protein--protein interface false-positive prediction},
     author = {Zhang, Chunzhuo},
     year = {2024},
     note = {Alanine-scanning benchmark for different models, extends DeepRank-GNN with harmonic-function equivariance. M.Sc. thesis project, Wageningen University \& Research.},
   }